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--
Dear Chris Mungall,
This is a computer-generated re****t for go-perl-0.08
on 5.6.2, created automatically by CPAN-Re****ter-1.08
and sent to the CPAN Testers mailing list.
If you have received this email directly, it is because the person testing
your distribution chose to send a copy to your CPAN email address; there
may be a delay before the official re****t is received and processed
by CPAN Testers.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this re****t:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
[none provided]
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 /usr/local/perl-5.6.2/bin/perl "-MExtUtils::Command::MM"
"-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/t010build................ok
t/t020paths................ok
t/t030detecterror..........ok
t/t050oboformat............ok
t/t060oboformat2...........ok
t/t070parseannot2obj.......ok
t/t080gofmt2...............ok
t/t100roundtrip............ok
t/t110basic................Use of uninitialized value in substitution
(s///) at GO/Parsers/obo_text_parser.pm line 484, <GEN0> line 81.
Use of uninitialized value in substitution (s///) at
GO/Parsers/obo_text_parser.pm line 485, <GEN0> line 81.
Use of uninitialized value in substitution (s///) at
GO/Parsers/obo_text_parser.pm line 516, <GEN0> line 81.
Use of uninitialized value in substitution (s///) at
GO/Parsers/obo_text_parser.pm line 484, <GEN0> line 82.
Use of uninitialized value in substitution (s///) at
GO/Parsers/obo_text_parser.pm line 485, <GEN0> line 82.
Use of uninitialized value in substitution (s///) at
GO/Parsers/obo_text_parser.pm line 516, <GEN0> line 82.
ok
t/t130relations............Use of uninitialized value in substitution
(s///) at GO/Parsers/obo_text_parser.pm line 484, <GEN0> line 19.
Use of uninitialized value in substitution (s///) at
GO/Parsers/obo_text_parser.pm line 485, <GEN0> line 19.
Use of uninitialized value in substitution (s///) at
GO/Parsers/obo_text_parser.pm line 516, <GEN0> line 19.
Use of uninitialized value in substitution (s///) at
GO/Parsers/obo_text_parser.pm line 484, <GEN1> line 81.
Use of uninitialized value in substitution (s///) at
GO/Parsers/obo_text_parser.pm line 485, <GEN1> line 81.
Use of uninitialized value in substitution (s///) at
GO/Parsers/obo_text_parser.pm line 516, <GEN1> line 81.
Use of uninitialized value in substitution (s///) at
GO/Parsers/obo_text_parser.pm line 484, <GEN1> line 82.
Use of uninitialized value in substitution (s///) at
GO/Parsers/obo_text_parser.pm line 485, <GEN1> line 82.
Use of uninitialized value in substitution (s///) at
GO/Parsers/obo_text_parser.pm line 516, <GEN1> line 82.
ok
t/t140subgraph.............ok
t/t150xref.................ok
t/t160logicaldef...........ok
t/t170chadoxml.............ok
t/t180ncbi_taxonomy........ok
t/t200impliedlinks.........ok
t/t210cache................Use of uninitialized value in substitution
(s///) at GO/Parsers/obo_text_parser.pm line 484, <GEN0> line 81.
Use of uninitialized value in substitution (s///) at
GO/Parsers/obo_text_parser.pm line 485, <GEN0> line 81.
Use of uninitialized value in substitution (s///) at
GO/Parsers/obo_text_parser.pm line 516, <GEN0> line 81.
Use of uninitialized value in substitution (s///) at
GO/Parsers/obo_text_parser.pm line 484, <GEN0> line 82.
Use of uninitialized value in substitution (s///) at
GO/Parsers/obo_text_parser.pm line 485, <GEN0> line 82.
Use of uninitialized value in substitution (s///) at
GO/Parsers/obo_text_parser.pm line 516, <GEN0> line 82.
ok
t/t220xref_esc.............ok
t/t230term_expression......ok
t/t240ga2obj...............ok
t/t260oborel_in_chado......ok
t/t270oborel_in_owl........ok
All tests successful.
Files=22, Tests=129, 28 wallclock secs ( 0.48 usr 0.04 sys + 17.96 cusr
0.77 csys = 19.25 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------ ---- -----
Data::Dumper 0 2.121
Data::Stag 0.07 0.10
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
LANG = de_DE.UTF-8
PATH =
/usr/lib/ccache:/home/sand/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/games:/usr/local/perl/bin:/usr/X11/bin:/sbin:/usr/sbin
PERL5LIB =
PERL5_CPANPLUS_IS_RUNNING = 11617
PERL5_CPAN_IS_RUNNING = 11617
PERL_MM_USE_DEFAULT = 1
SHELL = /usr/bin/zsh
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /usr/local/perl-5.6.2/bin/perl
$UID/$EUID = 1005 / 1005
$GID = 1005 1005
$EGID = 1005 1005
Perl module toolchain versions installed:
Module Have
------------------- -------
CPAN 1.92_56
Cwd 3.27
ExtUtils::CBuilder 0.19
ExtUtils::Command 1.13
ExtUtils::Install 1.44
ExtUtils::MakeMaker 6.43_01
ExtUtils::Manifest 1.51
ExtUtils::Par***S 2.18
File::Spec 3.27
Module::Build 0.2808
Module::Signature 0.55
Test::Harness 3.07
Test::More 0.74
YAML n/a
YAML::Syck 1.01
version 0.74
--
Summary of my perl5 (revision 5.0 version 6 subversion 2) configuration:
Platform:
osname=linux, osvers=2.6.16-2-k7, archname=i686-linux-64int
uname='linux k75 2.6.16-2-k7 #2 mon may 22 23:23:54 utc 2006 i686
gnulinux '
config_args='-Dprefix=/usr/local/perl-5.6.2 -Dinstallusrbinperl=n
-Uversiononly -Doptimize=-g -es -Duse64bitint -Dusedevel -des'
hint=recommended, useposix=true, d_sigaction=define
usethreads=undef use5005threads=undef useithreads=undef
usemultiplicity=undef
useperlio=undef d_sfio=undef uselargefiles=define usesocks=undef
use64bitint=define use64bitall=undef uselongdouble=undef
Compiler:
cc='cc', ccflags ='-DDEBUGGING -fno-strict-aliasing
-I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-g',
cppflags='-DDEBUGGING -fno-strict-aliasing -I/usr/local/include'
ccversion='', gccversion='4.0.4 20060507 (prerelease) (Debian
4.0.3-3)', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
ivtype='long long', ivsize=8, nvtype='double', nvsize=8,
Off_t='off_t', lseeksize=8
alignbytes=4, usemymalloc=n, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -L/usr/local/lib'
libpth=/usr/local/lib /lib /usr/lib
libs=-lnsl -lgdbm -ldb -ldl -lm -lc -lcrypt -lutil
perllibs=-lnsl -ldl -lm -lc -lcrypt -lutil
libc=/lib/libc-2.3.6.so, so=so, useshrplib=false, libperl=libperl.a
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-rdynamic'
cccdlflags='-fpic', lddlflags='-shared -L/usr/local/lib'
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